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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11549984 chr3:139258411 G/A 4.39E-6 490 15.9 16.87 14.53 KM Plot
THCA rs11551276 chr16:15155407 G/A 0.000135 490 16.63 13.9 14.9 KM Plot
THCA rs11555079 chr1:41493749 G/A 0.000175 484 14.92 17.67 17.7 KM Plot
THCA rs11563436 chr7:89884701 C/G 0.000144 490 13.83 15.98 15.9 KM Plot
THCA rs11563921 chr7:89884167 A/G 1.05E-5 490 11.18 19.8 15.33 KM Plot
THCA rs11570162 chr16:12062328 C/T 0 485 15.9 16.8 17.77 KM Plot
THCA rs11576332 chr1:184015956 T/A 6.14E-6 483 14.93 17.47 20.9 KM Plot
THCA rs11577378 chr1:22420449 C/T 4.68E-8 489 15.32 17.73 9.47 KM Plot
THCA rs115787070 chr19:43551025 T/C 5.85E-5 487 15.32 17.77 10.08 KM Plot
THCA rs115790427 chr19:43579028 T/G 0.000256 485 15.32 18.3 10.08 KM Plot
THCA rs11579182 chr1:22374693 A/G 4.17E-8 488 15.3 17.73 9.47 KM Plot
THCA rs115794593 chr1:91826620 T/C 7.73E-6 490 15.68 16.97 17.77 KM Plot
THCA rs11580039 chr1:22375190 T/C 4.17E-8 488 15.3 17.73 9.47 KM Plot
THCA rs11580451 chr1:22431337 C/T 1.81E-9 481 15.65 17.83 9.47 KM Plot
THCA rs11580864 chr1:22452374 T/C 4.78E-7 479 15.63 18.47 6.87 KM Plot